Tissue Mapper

Tissue Mapper^TM

Tissue Mapper is a comprehensive annotation and delineation tool used for mapping tissue structures. You can:

Easily delineate structures at any resolution to create a 3D model from image data
Annotate regions of interest from customizable ontology list
Map images acquired with brightfield, confocal, two-photon, widefield fluorescence, or light sheet microscopes and with MRI and microCT

The data is courtesy of the James Schwaber and Zixi (Jack) Cheng research teams at Thomas Jefferson University and University of Central Florida. DOI: doi.org/10.26275/wox9-gqzp

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Quickly Populate a Custom Anatomy List

With a click of a button, import custom list with anatomies specific to your organ
Easily customize name and color after import
Dock the toolbar for easy access to anatomical terms as you map tissue structures
Conveniently share list file with others

Automatically Outline Periphery of Histological Sections

Visualize Completed Annotations in Interactive 3D Environment

Take high resolution screenshots of annotated maps for publications
Easily export data files and movie files
Compatible with other MBF Bioscience products
Supports almost all file formats

MBF Whole Slide Scanners recommended for use with Tissue Mapper

TissueScope^TM
ts.png	• Brightfield slide scanner that handles up to twelve, 1”x 3” (25mm x 75mm) slides, six, 2” x 3” (50mm x 75mm) slides or any single slide up to 6” x 8” (150mm x 200mm) for larger specimens that most other scanners can’t handle. At a 60 micron section thickness/internal, an entire mouse brain can be mounted in a single tray
Vesalius^®
vs.png	• 2D & 3D, 5- channel laser confocal slide scanning • Image cleared tissue up to 6mm thickness • 2-channel, whole slide imaging in only three minutes at 10x

Professional Technical Support

When you call us you will speak with a person - not an automated system. Talk to us about your hardware, software, or experimental design questions. Our team includes Ph.D. neuroscientists and experts in microscopy, stereology, neuron tracing, and image processing; ready to help you over the phone or online.