Microlucida®Citations

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Neurobiology of Disease

Bioenergetic and protein processing imbalances in iPSC-dopamine neurons from individuals with idiopathic Parkinson's disease

January 2026
Kelsey Bernard, Mandi J. Corenblum, Paola Tonino, Lalitha Madhavan
Springer Nature Link

Brain-derived neurotrophic factor supports pericyte and vascular homeostasis in the aging brain

01 December 2025
Luo, Q., Quan, W., Cao, Q., Scheffel, C., Hao, W., Yang, J., Furihata, T., Peng, G., Tang, Z., & Liu, Y.
Communications Biology

StainAI: quantitative mapping of stained microglia and insights into brain-wide neuroinflammation and therapeutic effects in cardiac arrest

20 March 2025
Hsu, CH., Hsu, YY., Chang, BM. et al.

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Ager, R. R., Davis, J. L., Agazaryan, A., Benavente, F., Poon, W. W., LaFerla, F. M., & Blurton-Jones, M. (n.d.). Human neural stem cells improve cognition and promote synaptic growth in two complementary transgenic models of Alzheimer’s disease and neuronal loss. https://doi.org/10.1002/hipo.22405

Anandhan, A., Nguyen, N., Syal, A., Dreher, L. A., Dodson, M., Zhang, D. D., & Madhavan, L. (2024). Erratum to “NRF2 Loss Accentuates Parkinsonian Pathology and Behavioral Dysfunction in Human α-Synuclein Overexpressing Mice.” Aging and Disease, 15(3), 951–952. https://doi.org/10.14336/AD.2023.10917

Bartsch, H., Maechler, P., & Annese, J. (2012). Automated Determination of Axonal Orientation in the Deep White Matter of the Human Brain. Brain Connectivity, 2(5), 284–290. https://doi.org/10.1089/brain.2012.0096

Bernard, K., Corenblum, M. J., Tonino, P., & Madhavan, L. (2026). Bioenergetic and protein processing imbalances in iPSC-dopamine neurons from individuals with idiopathic Parkinson’s disease. Neurobiology of Disease, 218, 107222. https://doi.org/10.1016/j.nbd.2025.107222

Corenblum, M. J., McRobbie-Johnson, A., Carruth, E., Bernard, K., Luo, M., Mandarino, L. J., Peterson, S., Sans-Fuentes, M. A., Billheimer, D., & Maley, T. (2023). Parallel neurodegenerative phenotypes in sporadic Parkinson’s disease fibroblasts and midbrain dopamine neurons. Progress in Neurobiology, 229, 102501.

Diniz, G. B., Battagello, D. S., Cherubini, P. M., Reyes-Mendoza, J. D., Luna-Illades, C., Klein, M. O., Motta-Teixeira, L. C., Sita, L. V., Miranda-Anaya, M., Morales, T., & Bittencourt, J. C. (n.d.). Melanin‐concentrating hormone peptidergic system: Comparative morphology between muroid species. https://doi.org/10.1002/cne.24723

Diniz, G. B., Battagello, D. S., Klein, M. O., Bono, B. S. M., Ferreira, J. G. P., Motta-Teixeira, L. C., Duarte, J. C. G., Presse, F., Nahon, J.-L., Adamantidis, A., Chee, M. J., Sita, L. V., & Bittencourt, J. C. (n.d.). Ciliary melanin‐concentrating hormone receptor 1 (MCHR1) is widely distributed in the murine CNS in a sex‐independent manner. https://doi.org/10.1002/jnr.24651

Diniz, G. B., Candido, P. L., Klein, M. O., Alvisi, R. D., Presse, F., Nahon, J.-L., Felicio, L. F., & Bittencourt, J. C. (2018). The weaning period promotes alterations in the orexin neuronal population of rats in a suckling-dependent manner. Brain Structure and Function, 223(8), 3739–3755. https://doi.org/10.1007/s00429-018-1723-0

Gao, Y., Shen, M., Gonzalez, J. C., Dong, Q., Kannan, S., Hoang, J. T., Eisinger, B. E., Pandey, J., Javadi, S., Chang, Q., Wang, D., Overstreet-Wadiche, L., & Zhao, X. (2020). RGS6 Mediates Effects of Voluntary Running on Adult Hippocampal Neurogenesis. Cell Reports, 32(5). https://doi.org/10.1016/j.celrep.2020.107997

Gao, Y., Wang, F., Eisinger, B. E., Kelnhofer, L. E., Jobe, E. M., & Zhao, X. (2017). Integrative Single-Cell Transcriptomics Reveals Molecular Networks Defining Neuronal Maturation During Postnatal Neurogenesis. Cerebral Cortex, 27(3), 2064–2077. https://doi.org/10.1093/cercor/bhw040

Gomes, I., Bobeck, E. N., Margolis, E. B., Gupta, A., Sierra, S., Fakira, A. K., Fujita, W., Müller, T. D., Müller, A., Tschöp, M. H., Kleinau, G., Fricker, L. D., & Devi, L. A. (2016). Identification of GPR83 as the receptor for the neuroendocrine peptide PEN. Science Signaling, 9(425), ra43–ra43. https://doi.org/10.1126/scisignal.aad0694

Hao, W., Luo, Q., Menger, M. D., Fassbender, K., & Liu, Y. (2021). Treatment With CD52 Antibody Protects Neurons in Experimental Autoimmune Encephalomyelitis Mice During the Recovering Phase. Frontiers in Immunology, 12. https://doi.org/10.3389/fimmu.2021.792465

Hao, W., Luo, Q., Szabo, I. M., Gasparoni, G., Tierling, S., Quan, W., Chang, H.-F., Wu, G., Schulze-Hentrich, J., & Liu, Y. (2025). Intestinal epithelial Dicer1 regulates gut microbiome and Alzheimer’s pathology in App-knock-in mice. Alzheimer’s Research & Therapy, 17(1), 202. https://doi.org/10.1186/s13195-025-01849-w

Hao, W., Luo, Q., Tomic, I., Quan, W., Hartmann, T., Menger, M. D., Fassbender, K., & Liu, Y. (2024). Modulation of Alzheimer’s disease brain pathology in mice by gut bacterial depletion: The role of IL-17a. Gut Microbes, 16(1), 2363014. https://doi.org/10.1080/19490976.2024.2363014

Hernandez, C. M., Florant, G. L., & Stranahan, A. M. (2024). Seasonal fluctuations in BDNF regulate hibernation and torpor in golden-mantled ground squirrels. American Journal of Physiology-Regulatory, Integrative and Comparative Physiology, 326(4), R311–R318. https://doi.org/10.1152/ajpregu.00186.2023

Hyer, M. M., & Glasper, E. R. (2017). Separation increases passive stress-coping behaviors during forced swim and alters hippocampal dendritic morphology in California mice. PLOS ONE, 12(4), e0175713. https://doi.org/10.1371/journal.pone.0175713

Hyer, M. M., Hunter, T. J., Katakam, J., Wolz, T., & Glasper, E. R. (n.d.). Neurogenesis and anxiety‐like behavior in male California mice during the mate’s postpartum period. https://doi.org/10.1111/ejn.13168

Hyer, M. M., Khantsis, S., Venezia, A. C., Madison, F. N., Hallgarth, L., Adekola, E., & Glasper, E. R. (2017). Estrogen-dependent modifications to hippocampal plasticity in paternal California mice (Peromyscus californicus). Hormones and Behavior, 96, 147–155. https://doi.org/10.1016/j.yhbeh.2017.09.015

Iliff, J. J., Lee, H., Yu, M., Feng, T., Logan, J., Nedergaard, M., & Benveniste, H. (2013). Brain-wide pathway for waste clearance captured by contrast-enhanced MRI. The Journal of Clinical Investigation, 123(3), 1299–1309. https://doi.org/10.1172/JCI67677

James, M. L., Belichenko, N. P., Shuhendler, A. J., Hoehne, A., Andrews, L. E., Condon, C., Nguyen, T.-V. V., Reiser, V., Jones, P., & Trigg, W. (2017). [18F] GE-180 PET detects reduced microglia activation after LM11A-31 therapy in a mouse model of Alzheimer’s disease. Theranostics, 7(6), 1422.

Kremer, J. L., Sanchez Ortega, H., Souza-Siqueira, T., Blanes Angeli, C., Kei Iwai, L., Palmisano, G., & Ferini Pacicco Lotfi, C. (2024). Proteomic profiling of the extracellular matrix in the human adrenal cortex. Matrix Biology Plus, 23, 100158. https://doi.org/10.1016/j.mbplus.2024.100158

Kremer, J. L., Santiago, V. F., Bongiovani Rodrigues, F., Auricino, T. B., Freitas, D. H. de O., Palmisano, G., & Lotfi, C. F. P. (2024). Extracellular matrix protein signatures of the outer and inner zones of the rat adrenal cortex. Journal of Proteome Research, 23(8), 3418–3432.

Kress, B. T., Iliff, J. J., Xia, M., Wang, M., Wei, H. S., Zeppenfeld, D., Xie, L., Kang, H., Xu, Q., Liew, J. A., Plog, B. A., Ding, F., Deane, R., & Nedergaard, M. (2014). Impairment of paravascular clearance pathways in the aging brain. Annals of Neurology, 76(6), 845–861. https://doi.org/10.1002/ana.24271

Lee, H., Xie, L., Yu, M., Kang, H., Feng, T., Deane, R., Logan, J., Nedergaard, M., & Benveniste, H. (2015). The Effect of Body Posture on Brain Glymphatic Transport. Journal of Neuroscience, 35(31), 11034–11044. https://doi.org/10.1523/JNEUROSCI.1625-15.2015

Luo, Q., Quan, W., Cao, Q., Scheffel, C., Hao, W., Yang, J., Furihata, T., Peng, G., Tang, Z., & Liu, Y. (2025). Brain-derived neurotrophic factor supports pericyte and vascular homeostasis in the aging brain. Acta Neuropathologica Communications, 13(1), 246. https://doi.org/10.1186/s40478-025-02181-y

Lyon, J. G., Carroll, S. L., Mokarram, N., & Bellamkonda, R. V. (2019). Electrotaxis of Glioblastoma and Medulloblastoma Spheroidal Aggregates. Scientific Reports, 9(1), 5309. https://doi.org/10.1038/s41598-019-41505-6

Margolis, E. B., & Fields, H. L. (2016). Mu Opioid Receptor Actions in the Lateral Habenula. PLOS ONE, 11(7), e0159097. https://doi.org/10.1371/journal.pone.0159097

McGee-Lawrence, M. E., Wenger, K. H., Misra, S., Davis, C. L., Pollock, N. K., Elsalanty, M., Ding, K., Isales, C. M., Hamrick, M. W., Wosiski-Kuhn, M., Arounleut, P., Mattson, M. P., Cutler, R. G., Yu, J. C., & Stranahan, A. M. (2017). Whole-Body Vibration Mimics the Metabolic Effects of Exercise in Male Leptin Receptor–Deficient Mice. Endocrinology, 158(5), 1160–1171. https://doi.org/10.1210/en.2016-1250

Müller-Starck, J., Büttner, A., Kiessling, M. C., Angstman, N. B., Császár, N. B. M., Haeussner, E., Hochstrasser, T., Sternecker, K., Hof, P. R., Milz, S., Frank, H.-G., & Schmitz, C. (2014). No Changes in Cerebellar Microvessel Length Density in Sudden Infant Death Syndrome: Implications for Pathogenetic Mechanisms. Journal of Neuropathology & Experimental Neurology, 73(4), 312–323. https://doi.org/10.1097/NEN.0000000000000055

Neuroscience, S. for. (2024). Erratum: Wang et al., “Focal Solute Trapping and Global Glymphatic Pathway Impairment in a Murine Model of Multiple Microinfarcts.” Journal of Neuroscience, 44(18). https://doi.org/10.1523/JNEUROSCI.0636-24.2024

Plog, B. A., Dashnaw, M. L., Hitomi, E., Peng, W., Liao, Y., Lou, N., Deane, R., & Nedergaard, M. (2015). Biomarkers of Traumatic Injury Are Transported from Brain to Blood via the Glymphatic System. Journal of Neuroscience, 35(2), 518–526. https://doi.org/10.1523/JNEUROSCI.3742-14.2015

Quan, W., Decker, Y., Luo, Q., Chemla, A., Chang, H.-F., Li, D., Fassbender, K., & Liu, Y. (2024). Deficiency of NLRP3 protects cerebral pericytes and attenuates Alzheimer’s pathology in tau-transgenic mice. Frontiers in Cellular Neuroscience, 18. https://doi.org/10.3389/fncel.2024.1471005

Quan, W., Luo, Q., Hao, W., Tomic, I., Furihata, T., Schulz‐Schäffer, W., Menger, M. D., Fassbender, K., & Liu, Y. (2021). Haploinsufficiency of microglial MyD88 ameliorates Alzheimer’s pathology and vascular disorders in APP / PS1 ‐transgenic mice. Glia, 69(8), 1987–2005. https://doi.org/10.1002/glia.24007

Quinlan, S., Khan, T., McFall, D., Campos-Rodriguez, C., & Forcelli, P. A. (2024). Early life phenobarbital exposure dysregulates the hippocampal transcriptome. Frontiers in Pharmacology, 15. https://doi.org/10.3389/fphar.2024.1340691

Sarkar, A., Mei, A., Paquola, A. C. M., Stern, S., Bardy, C., Klug, J. R., Kim, S., Neshat, N., Kim, H. J., Ku, M., Shokhirev, M. N., Adamowicz, D. H., Marchetto, M. C., Jappelli, R., Erwin, J. A., Padmanabhan, K., Shtrahman, M., Jin, X., & Gage, F. H. (2018). Efficient Generation of CA3 Neurons from Human Pluripotent Stem Cells Enables Modeling of Hippocampal Connectivity In Vitro. Cell Stem Cell, 22(5), 684-697.e9. https://doi.org/10.1016/j.stem.2018.04.009

Simmons, D. A., Belichenko, N. P., & Longo, F. M. (2023). Pharmacological Co-Activation of TrkB and TrkC Receptor Signaling Ameliorates Striatal Neuropathology and Motor Deficits in Mouse Models of Huntington’s Disease. Journal of Huntington’s Disease, 12(3), 215–239. https://doi.org/10.3233/JHD-230589

Simmons, D. A., Belichenko, N. P., Yang, T., Condon, C., Monbureau, M., Shamloo, M., Jing, D., Massa, S. M., & Longo, F. M. (2013). A Small Molecule TrkB Ligand Reduces Motor Impairment and Neuropathology in R6/2 and BACHD Mouse Models of Huntington’s Disease. Journal of Neuroscience, 33(48), 18712–18727. https://doi.org/10.1523/JNEUROSCI.1310-13.2013

Stranahan, A. M., Hao, S., Dey, A., Yu, X., & Baban, B. (2016). Blood–brain barrier breakdown promotes macrophage infiltration and cognitive impairment in leptin receptor-deficient mice. Journal of Cerebral Blood Flow & Metabolism, 36(12), 2108–2121. https://doi.org/10.1177/0271678X16642233

Stranahan, A. M., Tabet, A., & Anikeeva, P. (2024). Region-specific targeting of microglia in vivo using direct delivery of tamoxifen metabolites via microfluidic polymer fibers. Brain, Behavior, and Immunity, 115, 131–142. https://doi.org/10.1016/j.bbi.2023.09.021

Thrane, V. R., Thrane, A. S., Plog, B. A., Thiyagarajan, M., Iliff, J. J., Deane, R., Nagelhus, E. A., & Nedergaard, M. (2013). Paravascular microcirculation facilitates rapid lipid transport and astrocyte signaling in the brain. Scientific Reports, 3(1), 2582. https://doi.org/10.1038/srep02582

Ton, H. T., Raffensperger, K., & Shoykhet, M. (2021). Early Thalamic Injury After Resuscitation From Severe Asphyxial Cardiac Arrest in Developing Rats. Frontiers in Cell and Developmental Biology, 9. https://doi.org/10.3389/fcell.2021.737319

Wang, M., Iliff, J. J., Liao, Y., Chen, M. J., Shinseki, M. S., Venkataraman, A., Cheung, J., Wang, W., & Nedergaard, M. (2012). Cognitive Deficits and Delayed Neuronal Loss in a Mouse Model of Multiple Microinfarcts. Journal of Neuroscience, 32(50), 17948–17960. https://doi.org/10.1523/JNEUROSCI.1860-12.2012

Wosiski-Kuhn, M., Bota, M., Snider, C. A., Wilson, S. P., Venkataraju, K. U., Osten, P., & Stranahan, A. M. (n.d.). Hippocampal brain‐derived neurotrophic factor determines recruitment of anatomically connected networks after stress in diabetic mice. https://doi.org/10.1002/hipo.23018

Yang, L., Kress, B. T., Weber, H. J., Thiyagarajan, M., Wang, B., Deane, R., Benveniste, H., Iliff, J. J., & Nedergaard, M. (2013). Evaluating glymphatic pathway function utilizing clinically relevant intrathecal infusion of CSF tracer. Journal of Translational Medicine, 11(1), 107. https://doi.org/10.1186/1479-5876-11-107