Tracing with the smart manual mode(3D)
Before you start
- Open an image stack or single images.
- Make image adjustments as necessary.
- Open the 3D Visualization window.
- If you're using the 3D Volume view, select Partial projection under Image stack settings in the Image Display panel.
Tracing
- Click the Vessel button to display the Trace Vessels panel and select Smart manual.
- Check Snap cursor to tracing so that you can easily connect two segments while tracing or resume tracing later (potential connecting points will be displayed as wireframe spheres or rings).
- Check Pan to window after each click so that the program re-centers each point outside the field of view automatically.
- Place the cursor over the vessel and adjust the cursor diameter to match the diameter of the vessel at that point: Hold down Ctrl and scroll the mouse wheel.
- Click to place the first point.
- Place the cursor over the next point, adjust the cursor diameter, and click to place the next point.
- Move the partial projection sliders as needed to reveal more of the vessels and continue tracing.
- When you want to end the vessel or connect to another segment, click to place the last point then right-click and select Ending.
Resuming tracing
- Place the cursor over the vessel until you see a potential connecting point (signaled by a wireframe sphere or ring).
- Click and continue tracing.
Use Ctrl-Z to undo your last click.
Tracing with the user-guided mode(3D), Tracing with the automatic mode(3D), Editing vessels (3D)